Submissions from 2022
Research Report: High Tunnel Tomato Fruit Cluster Pruning, Caterina Roman and Rebecca G. Sideman
Submissions from 2017
Guiding Stars Influences Perception of Healthy Food Choices at a 4-Year University, Gale B. Carey, Rochelle J. L'Italien, and Jesse S. Morrell
Permanent draft genome sequence of Ensifer sp. strain LCM 4579, a salt-tolerant, nitrogen-fixing bacterium isolated from Senegalese soil, Nathalie Diagne, Erik Swanson, Celine Pesce, Fatoumata Fall, Fatou Diouf, Niokhor Bakhoum, Dioumacor Fall, Mathieu Ndigue Faye, Rediet Oshone, Stephen D. Simpson, Krystalynne Morris, William Kelley Thomas, Lionel Moulin, Diegane Diouf, and Louis S. Tisa
Bacterial community profiles and Vibrio parahaemolyticus abundance in individual oysters and their association with estuarine ecology, Ashley L. Marcinkiewicz, Brian M. Schuster, Stephen H. Jones, Vaughn S. Cooper, and Cheryl A. Whistler
Host-selected mutations converging on a global regulator drive an adaptive leap towards symbiosis in bacteria, Molly Sabrina Pankey, Randi L. Foxall, Ian M. Ster, Lauren A. Perry, Brian M. Schuster, Rachel A. Donner, Matthew Coyle, Vaughn S. Cooper, and Cheryl A. Whistler
Submissions from 2016
Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants, Behailu B. Aklilu and Kevin M. Culligan
Anthropogenic Habitats Facilitate Dispersal of an Early Successional Obligate: Implications for Restoration of an Endangered Ecosystem, Katrina E. Amaral, Michael W. Palace, Kathleen M. O'Brien, Lindsey E. Fenderson, and Adrienne I. Kovach
Nitrogen additions mobilize soil base cations in two tropical forests, Daniela F. Cusack, Jordan Macy, and William H. McDowell
Permanent Draft Genome Sequence for Frankia sp. Strain EI5c, a Single-Spore Isolate of a Nitrogen-Fixing Actinobacterium, Isolated from the Root Nodules of Elaeagnus angustifolia, Timothy D'Angelo, Rediet Oshone, Feseha Abebe-Akele, Stephen D. Simpson, Krystalynne Morris, William Kelley Thomas, and Louis S. Tisa
Genetic variation within and among asexual populations of Porphyra umbilicalis Kützing (Bangiales, Rhodophyta) in the Gulf of Maine, USA, Renee L. Eriksen, Lindsay A. Green, and Anita S. Klein
Effects of artificial epibionts on byssogenesis, attachment strength, and movement in two size classes of the blue mussel, Mytilus edulis, Yvette L. Garner and Marianne K. Litvaitis
Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter, Kevin M. Geyer, Emily Kyker-Snowman, Andrew Stuart Grandy, and Serita D. Frey
Permanent draft genome sequence of Nocardia sp. BMG111209, an actinobacterium isolated from nodules of Casuarina glauca, Faten Ghodhbane-Gtari, Nicholas Beauchemin, Abdellatif Gueddou, Karima Hezbri, Moussa Louati, Imen Nouioui, Amy Chen, Marcel Huntemann, Natalia Ivanova, Nikos Kyrpides, Victor Markowitz, Kostas Mavrommatis, Ioanna Pagani, Arnab Sen, Luis Wall, Tanja Woyke, Maher Gtari, and Louis S. Tisa
Permanent improved high-quality draft genome sequence of Nocardia casuarinae strain BMG51109, an endophyte ofactinorhizal root nodules of Casuarina glauca, Faten Ghodhbane-Gtari, Nicholas Beauchemin, Moussa Louati, Imen Nouioui, Amir Ktari, Karima Hezbri, Abdellatif Gueddou, Amy Chen, Marcel Huntemann, Natalia Ivanova, Nikos Kyrpides, Victor Markowitz, Kostas Mavrommatis, Ioanna Pagani, Arnab Sen, Luis Wall, Tanja Woyke, Maher Gtari, and Louis S. Tisa
Assessment of recent eastern oyster (Crassostrea virginica) reef restoration projects in the Great Bay Estuary, New Hampshire: Planning for the future, Raymond E. Grizzle and Krystin M. Ward
In-Season and Carry-Over Effects of Cover Crops on Productivity and Weed Suppression, Elisabeth A. Hodgdon, Nicholas D. Warren, Richard G. Smith, and Rebecca G. Sideman
Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock, Pauline L. Kamath, Jeffrey T. Foster, Kevin P. Drees, Gordon Luikart, Christine Quance, Neil J. Anderson, P. Ryan Clarke, Eric K. Cole, Mark L. Drew, William H. Edwards, Jack C. Rhyan, John J. Treanor, Rick L. Wallen, Patrick J. White, Suelee Robbe-Austerman, and Paul C. Cross
A High-Density Linkage Map of the Ancestral Diploid Strawberry, Fragaria iinumae, Constructed with Single Nucleotide Polymorphism Markers from the IStraw90 Array and Genotyping by Sequencing, Lise L. Mahoney, Daniel J. Sargent, Feseha Abebe-Akele, David J. Wood, Judson A. Ward, Nahla V. Bassil, James F. Hancock, Kevin M. Folta, and Thomas M. Davis
Glutamate, Ornithine, Arginine, Proline, and Polyamine Metabolic Interactions: The Pathway Is Regulated at the Post-Transcriptional Level, Rajtilak Majumdar, Boubker Barchi, Swathi A. Turlapati, Maegan Gagne, Rakesh Minocha, Stephanie Long, and Subhash C. Minocha
Permanent draft genome sequence for Frankia sp. strain CeD, a nitrogen-fixing actinobacterium isolated from the root nodules of Casuarina equistifolia grown in Senegal, Mariama Ngom, Rediet Oshone, Sheldon G. Hurst IV, Feseha Abebe-Akele, Stephen D. Simpson, Krystalynne Morris, Mame Oureye Sy, Antony Champion, William Kelley Thomas, and Louis S. Tisa
Permanent draft genome sequences for two variants of Frankia sp. strain CpI1, the first Frankia strain isolated from root nodules of Comptonia peregrina, Rediet Oshone, Sheldon G. Hurst IV, Feseha Abebe-Akele, Stephen D. Simpson, Krystalynne Morris, William Kelley Thomas, and Louis S. Tisa
Ancient origins of metazoan gonadotropin-releasing hormone and their receptors revealed by phylogenomic analyses, David C. Plachetzki, Pei-San Tsai, Scott I. Kavanaugh, and Stacia A. Sower
Frankia as a Biodegrading Agent, Medhat Rehan, Erik Swanson, and Louis S. Tisa
The Genome and Methylome of a Subsocial Small Carpenter Bee, Ceratina calcarata, Sandra M. Rehan, Karl M. Glastad, Sarah P. Lawson, and Brendan G. Hunt
Greenhouse gas flux from headwater streams in New Hampshire, USA: Patterns and drivers, John D. Schade, Jason Bailio, and William H. McDowell
De novo genome assembly of Geosmithia morbida, the causal agent of thousand cankers disease, Taruna A. Schuelke, Anthony Westbrook, Kirk Broders, Keith Woeste, and Matthew D. Macmanes
Development of Multiple Polymorphic Microsatellite Markers for Ceratina calcarata (Hymenoptera: Apidae) Using Genome-Wide Analysis, Wyatt A. Shell and Sandra M. Rehan
Extreme weather years drive episodic changes in lake chemistry: implications for recovery from sulfate deposition and long-term trends in dissolved organic carbon, Kristin E. Strock, Jasmine E. Saros, Sarah J. Nelson, Sean D. Birkel, Jeffrey S. Kahl, and William H. McDowell
GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data, Arthur Tavares De Oliveira Melo, Radhika Bartaula, and Iago L. Hale
Molecular manipulation of keratin 8/18 intermediate filaments: modulators of FAS-mediated death signaling in human ovarian granulosa tumor cells, Sarah K. Trisdale, Nicolette M. Schwab, Xiaoying Hou, John S. Davis, and David H. Townson
Extrinsic and intrinsic factors influence fitness in an avian hybrid zone, Jennifer Walsh, Brian J. Olsen, Katharine J. Ruskin, W. Gregory Shriver, Kathleen M. O'Brien, and Adrienne I. Kovach
Differential introgression and the maintenance of species boundaries in an advanced generation avian hybrid zone, Jennifer Walsh, W. Gregory Shriver, Brian J. Olsen, and Adrienne I. Kovach
Stoichiometry and Change of the mRNA Closed-Loop Factors as Translating Ribosomes Transit from Initiation to Elongation, Xin Wang, Wen Xi, Shaun Toomey, Yueh-Chin Chiang, Jiri Hasek, Thomas M. Laue, and Clyde L. Denis
Nitrate uptake across biomes and the influence of elemental stoichiometry: A new look at LINX II, Adam S. Wymore, Ashley A. Coble, Bianca Rodriguez-Cardona, and William H. McDowell
Multiple discrete soluble aggregates influence polyglutamine toxicity in a Huntington's disease model system, Wen Xi, Xin Wang, and Clyde L. Denis
Submissions from 2015
Genome sequence and comparative analysis of a putative entomopathogenic Serratia isolated from Caenorhabditis briggsae, Feseha Abebe-Akele, Louis S. Tisa, Vaughn S. Cooper, Philip J. Hatcher, Eyualem Abebe, and William Kelley Thomas
Short communication: Feeding red clover cut in the afternoon or morning to late-lactation dairy cows, N. T. Antaya, R. Berthiaume, G. F. Tremblay, and Andre F. Brito
Reducing bias and quantifying uncertainty in watershed flux estimates: the R package loadflex, Alison P. Appling, Miguel C. Leon, and William H. McDowell
Molecular responses of Frankia sp. strain QA3 to naphthalene, Ethan Baker, Yang Tang, Feixia Chu, and Louis S. Tisa
Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa, Nahla V. Bassil, Thomas M. Davis, Hailong Zhang, Stephen Ficklin, Mike Mittmann, Teresa Webster, Lise L. Mahoney, David J. Wood, Elisabeth S. Alperin, Umesh R. Rosyara, Herma Koehorst-vanc Putten, Amparo Monfort, Daniel J. Sargent, Iraida Amaya, Beatrice Denoyes, Luca Bianco, Thijs van Dijk, Ali Pirani, Amy Iezzoni, and Dorrie Main
Ecology of Codium fragile Subsp. Fragile Populations Within Salt Marsh Pannes in Southern Maine, Christopher S. Benton, Arthur C. Mathieson, and Anita S. Klein
Peritoneal Pigmentation in Purebred and Hybrid River Herring, David L. Berlinsky, Matthew A. DiMaggio, Timothy S. Breton, Jennifer Walsh, and Adrienne I. Kovach
The Use of Tricaine Methanesulfonate, Clove Oil, Metomidate, and 2-Phenoxyethanol for Anesthesia Induction in Alewives, David L. Berlinsky, Mark T. Watson, Matthew A. DiMaggio, and Timothy S. Breton
Limited influence of local and landscape factors on finescale gene flow in two pond-breeding amphibians, Stephanie S. Coster, Kimberly J. Babbitt, Andrew Cooper, and Adrienne I. Kovach
Polybrominated Diphenyl Ether (PBDE)-Induced Suppression of Phosphoenolpyruvate Carboxykinase (PEPCK) Decreases Hepatic Glyceroneogenesis and Disrupts Hepatic Lipid Homeostasis, Kylie R. Cowens, Stephen D. Simpson, William Kelley Thomas, and Gale B. Carey
Spawning, Larviculture, and Salinity Tolerance of Alewives and Blueback Herring in Captivity, Matthew A. DiMaggio, Harvey J. Pine, Linas W. Kenter, and David L. Berlinsky
Short communication: Use of a portable, automated, open-circuit gas quantification system and the sulfur hexafluoride tracer technique for measuring enteric methane emissions in Holstein cows fed ad libitum or restricted, C. D. Dorich, Ruth K. Varner, A. B. D. Pereira, R. Martineau, K. J. Soder, and Andre F. Brito
Spontaneous phenotypic suppression of GacA-defective Vibrio fischeri is achieved via mutation of csrA and ihfA, Randi L. Foxall, Alicia E. Ballok, Ashley Avitabile, and Cheryl A. Whistler
Effects of temperature, light level, and photoperiod on the physiology of Porphyra umbilicalis Kützing from the Northwest Atlantic, a candidate for aquaculture, Lindsay A. Green and Christopher D. Neefus
Effects of temperature, light level, photoperiod, and ammonium concentration on Pyropia leucosticta (Bangiales, Rhodophyta) from the Northwest Atlantic, Lindsay A. Green and Christopher D. Neefus
Land Cover Change Image Analysis for Assateague Island National Seashore Following Hurricane Sandy, Heather Grybas and Russell G. Congalton
Cultivating the uncultured: growing the recalcitrant cluster-2 Frankia strains, Maher Gtari, Faten Ghodhbane-Gtari, Imen Nouioui, Amir Ktari, Karima Hezbri, Wajdi Mimouni, Imed Sbissi, Amani Ayari, Takashi Yamanaka, Philippe Normand, Louis S. Tisa, and Abdellatif Boudabous
Effects of human visitation on calf growth and performance of calves fed different milk replacer feeding levels, N. E. Guindon, N. T. Antaya, R. G. Cabral, Nancy L. Whitehouse, T. J. Earleywine, and Peter S. Erickson
‘Rambling Rose’: A Pink-fruited Cherry Tomato for Hanging Basket Production, Elisabeth A. Hodgdon, Jennifer Bonina Noseworthy, and Rebecca G. Sideman
Elucidation of the Photorhabdus temperata Genome and Generation of a Transposon Mutant Library To Identify Motility Mutants Altered in Pathogenesis, Sheldon G. Hurst IV, Holli Rowedder, Brandye Michaels, Hannah Bullock, Ryan Jackobeck, Feseha Abebe-Akele, Umjia Durakovic, Jon Gately, Erik Janicki, and Louis S. Tisa
Microbial physiology and necromass regulate agricultural soil carbon accumulation, C. M. Kallenbach, Andrew Stuart Grandy, and A. F. Diefendorf
Development of diagnostic microsatellite markers from whole‐genome sequences of Ammodramus sparrows for assessing admixture in a hybrid zone, Adrienne I. Kovach, Jennifer Walsh, Jordan Ramsdell, and William Kelley Thomas
Bobcats (Lynx rufus) as a Model Organism to Investigate the Effects of Roads on Wide-Ranging Carnivores, John A. Litvaitis, Gregory C. Reed, Rory P. Carroll, Marianne K. Litvaitis, Jeffrey Tash, Tyler Mahard, Derek J. A. Broman, Cathrine Callahan, and Mark Ellingwood
A comparison of landscape fragmentation analysis programs for identifying possible invasive plant species locations in forest edge, Meghan Graham MacLean and Russell G. Congalton
An index to characterize the spatial distribution of land use within watersheds and implications for river network nutrient removal and export, Madeleine M. Mineau, Wilfred M. Wollheim, and Robert J. Stewart
Long-term trends of changes in pine and oak foliar nitrogen metabolism in response to chronic nitrogen amendments at Harvard Forest, MA, Rakesh Minocha, Swathi A. Turlapati, Stephanie Long, William H. McDowell, and Subhash C. Minocha
Field and laboratory methods to monitor lake aerosols for cyanobacteria and microcystins, A. L. Murby and James F. Haney
Integrating spot short-term measurements of carbon emissions and backward dietary energy partition calculations to estimate intake in lactating dairy cows fed ad libitum or restricted, A. B. D. Pereira, S. A. Utsumi, C. D. Dorich, and Andre F. Brito
Sustaining and enhancing local and organic agriculture: assessing consumerissues in New Hampshire, Mariama Pyburn, Kyle Puzacke, John M. Halstead, and Ju-Chin Huang
Incremental amounts of ground flaxseed decrease milk yield but increase n-3 fatty acids and conjugated linoleic acids in dairy cows fed high-forage diets, T. L. Resende, J. Kraft, K. J. Soder, A. B. D. Pereira, D. E. Woitschach, R. B. Reis, and Andre F. Brito
Performance of Sweetpotato Cultivars Grown Using Biodegradable Black Plastic Mulch in New Hampshire, Rebecca G. Sideman
A succession-energy framework for reducing non-target impacts of annual crop production, Richard G. Smith
Evidence for indirect effects of pesticide seed treatments on weed seed banks in maize and soybean, Richard G. Smith, Lesley W. Atwood, Matthew B. Morris, David A. Mortensen, and Roger T. Koide
Breaking Dogma on the Hypothalamic-Pituitary Anatomical Relations in Vertebrates, Stacia A. Sower
Emergence of an Ancestral Glycoprotein Hormone in the Pituitary of the Sea Lamprey, a Basal Vertebrate, Stacia A. Sower, Wayne A. Decatur, Krist N. Hausken, Timothy J. Marquis, Shannon L. Barton, James Gargan, Mihael Freamat, Michael Wilmot, Lian Hollander, Jeffrey A. Hall, Masumi Nozaki, Michal Shpilman, and Berta Levavi-Sivan
Permanent draft genome sequence of Frankia sp. strain ACN1ag, a nitrogen-fixing actinobacterium isolated from the root nodules of Alnus glutinosa, Erik Swanson, Rediet Oshone, Stephen D. Simpson, Krystalynne Morris, Feseha Abebe-Akele, William Kelley Thomas, and Louis S. Tisa
Permanent draft genome sequence of Frankia sp. strain AvcI1, a nitrogen-fixing actinobacterium isolated from the root nodules of Alnus viridis subsp. crispa grown in Canada, Erik Swanson, Rediet Oshone, Stephen D. Simpson, Krystalynne Morris, Feseha Abebe-Akele, William Kelley Thomas, and Louis S. Tisa
Draft genome sequence of Frankia sp. strain DC12, an atypical, noninfective, ineffective isolate from Datisca cannabina, Louis S. Tisa, Nicholas Beauchemin, Michael N. Cantor, Teal R. Furnholm, Faten Ghodhbane-Gtari, Lynne Goodwin, Alex Copeland, Maher Gtari, Marcel Huntemann, Natalia Ivanova, Nikos Kyrpides, Victor Markowitz, Kostas Mavrommatis, Natalia Mikhailova, Imen Nouioui, Rediet Oshone, Galina Ovchinnikova, Ioanna Pagani, Krishnaveni Palaniappan, and Amrita Pati
Oligotyping reveals stronger relationship of organic soil bacterial community structure with N-amendments and soil chemistry in comparison to that of mineral soil at Harvard Forest, MA, USA, Swathi A. Turlapati, Rakesh Minocha, Stephanie Long, Jordan Ramsdell, and Subhash C. Minocha
An Experimental Test of Buffer Utility as a Technique for Managing Pool-Breeding Amphibians, Jessica S. Veysey Powell and Kimberly J. Babbitt
Despite Buffers, Experimental Forest Clearcuts Impact Amphibian Body Size and Biomass, Jessica S. Veysey Powell and Kimberly J. Babbitt
Genotype-environment associations support a mosaic hybrid zone between two tidal marsh birds, Jennifer Walsh, Rebecca J. Rowe, Brian J. Olsen, W. Gregory Shriver, and Adrienne I. Kovach
Relationship of phenotypic variation and genetic admixture in the Saltmarsh–Nelson's sparrow hybrid zone, Jennifer Walsh, W. Gregory Shriver, Brian J. Olsen, Kathleen M. O'Brien, and Adrienne I. Kovach
Performance of High Tunnel Tomato Cultivars in Northern New England, Nicholas D. Warren, Rebecca G. Sideman, and Richard G. Smith
Effects of Living Mulch and Fertilizer on the Performance of Broccoli in Plasticulture, Nicholas D. Warren and Richard G. Smith
Use of Whole Genome Phylogeny and Comparisons in the Development of a Multiplex-PCR Assay to Identify Sequence Type 36 Vibrio parahaemolyticus, Cheryl A. Whistler, Jeffrey A. Hall, Feng Xu, Saba Ilyas, Puskar Siwakoti, Vaughn S. Cooper, and Stephen H. Jones
Direct response of dissolved organic nitrogen to nitrate availability in headwater streams, Adam S. Wymore, Bianca Rodriguez-Cardona, and William H. McDowell
Genetic characterization of clinical and environmental Vibrio parahaemolyticus from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages, Feng Xu, Saba Ilyas, Jeffrey A. Hall, Stephen H. Jones, Vaughn S. Cooper, and Cheryl A. Whistler
Submissions from 2014
Rosiglitazone modulates pigeon atherosclerotic lipid accumulation and gene expression in vitro, Janet L. Anderson, M. C. Keeley, S. C. Smith, E. C. Smith, and R. L. Taylor
The pigeon (Columba livia) model of spontaneous atherosclerosis, Janet L. Anderson, S. C. Smith, and R. L. Taylor
Incremental amounts of Ascophyllum nodosum meal do not improve animal performance but do increase milk iodine output in early lactation dairy cows fed high-forage diets, N. T. Antaya, K. J. Soder, Nancy L. Whitehouse, N. E. Guindon, Peter S. Erickson, Andrew B. Conroy, and Andre F. Brito
Disturbance-mediated dynamics of mid-tolerant hardwoods in an old pine-hemlock-hardwood forest, New Hampshire, USA, Haruka Asahina, Thomas D. Lee, and Robert T. Eckert
Characterizing ovarian gene expression during oocyte growth in Atlantic cod (Gadus morhua), Timothy S. Breton and David L. Berlinsky
Brain aromatase (cyp19a1b) and gonadotropin releasing hormone (gnrh2 and gnrh3) expression during reproductive development and sex change in black sea bass (Centropristis striata), Timothy S. Breton, Matthew A. DiMaggio, Stacia A. Sower, and David L. Berlinsky
Factors influencing detection in occupancy surveys of a threatened lagomorph, Daniel R. Brubaker, Adrienne I. Kovach, Mark J. Ducey, Walter J. Jakubas, and Kathleen M. O'Brien
Colostrum replacer feeding regimen, addition of sodium bicarbonate, and milk replacer: The combined effects on absorptive efficiency of immunoglobulin G in neonatal calves, R. G. Cabral, M. A. Cabral, C. E. Chapman, E. J. Kent, D. M. Haines, and Peter S. Erickson
Characterizing the Width of Amphibian Movements During Postbreeding Migration, Stephanie S. Coster, Jessica S. Veysey Powell, and Kimberly J. Babbitt
Effects of dietary genistein administration on growth, survival and sex determination in southern flounder, Paralichthys lethostigma, Matthew A. DiMaggio, Linas W. Kenter, Timothy S. Breton, and David L. Berlinsky
A Phylogenetic Analysis of the Genus Fragaria (Strawberry) Using Intron-Containing Sequence from the ADH-1 Gene, Laura M. DiMeglio, Gunter Staudt, Hongrun Yu, and Thomas M. Davis
Size-biased distributions in the generalized beta distribution family, with applications to forestry, Mark J. Ducey and Jeffrey H. Gove
A multiscale analysis of gene flow for the New England cottontail, an imperiled habitat specialist in a fragmented landscape, Lindsey E. Fenderson, Adrienne I. Kovach, John A. Litvaitis, Kathleen M. O'Brien, Kelly M. Boland, and Walter J. Jakubas
The ins and outs of metal homeostasis by the root nodule actinobacterium Frankia, Teal R. Furnholm and Louis S. Tisa
Contrasted Reactivity to Oxygen Tensions in Frankia sp. Strain CcI3 throughout Nitrogen Fixation and Assimilation, Faten Ghodhbane-Gtari, Karima Hezbri, Amir Ktari, Imed Sbissi, Nicholas Beauchemin, Maher Gtari, and Louis S. Tisa
Draft genome sequence of Frankia sp. strain BMG5.23, a salt-tolerant nitrogen-fixing actinobacterium isolated from the root nodules of Casuarina glauca grown in Tunisia, Faten Ghodhbane-Gtari, Sheldon G. Hurst IV, Rediet Oshone, Krystalynne Morris, Feseha Abebe-Akele, Amir Ktari, Karima Salem, Maher Gtari, and Louis S. Tisa
The effects of short- and long-term freezing on Porphyra umbilicalis Kützing (Bangiales, Rhodophyta) blade viability, Lindsay A. Green and Christopher D. Neefus