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Acoustic detection of organic enrichment in sediments at a salmon farm is confirmed by independent groundtruthing methods, D. J. Wildish, John E. Hughes Clarke, G. W. Pohle, B. T. Hargrave, and L. M. Mayer, (2004)

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Acoustic Seabed Surveying – Meeting the new demands for Accuracy, Coverage and Spatial Resolution, John E. Hughes Clarke, (2000)

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Application of Spatial Cross-Correlation to Detection of Migration of Submarine Sand Dunes, Garret P. Duffy and John E. Hughes Clarke, (2005)

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Application of surface sound speed measurements in post-processing for multi-sector multibeam echosounders, J. D. Beaudoin, John E. Hughes Clarke, and J. E. Bartlett, (2004)

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Applications of Multibeam Water Column Imaging for Hydrographic Survey, John E. Hughes Clarke, (2006)

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ArcticNet: The Current and Future Vision of its Seabed Mapping Program, J. Bartlett, J. Beaudoin, John E. Hughes Clarke, and S. Brucker, (2006)

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CCGS Amundsen: A New Mapping Platform for Canada's North, J. Bartlett, J. Beaudoin, and John E. Hughes Clarke, (2004)

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Classification of seafloor geology using multibeam sonar data from the Scotian Shelf, Neil C. Mitchell and John E. Hughes Clarke, (1994)

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Combining SAR data of Huon Peninsula and HAWAII MR1 data of Huon Gulf, Papua New Guinea, for studies of tectonic and sedimentary processes, John E. Hughes Clarke, Keith A. W. Crook, Donald R. Montgomery, Keyu Liu, Gregory P. Whitmore, and David P. Johnson, (1998)

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Crag and tail features, Amundsen Gulf, Canadian Arctic Archipelago, B. MacLean, S. Blasco, R. Bennett, John E. Hughes Clarke, and E. Patton, (2016)

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Dense Biological Communities at 3850m on the Laurentian Fan and their relationship to the deposits of the 1929 Grand Banks Earthquake, John E. Hughes Clarke, (1988)

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Detecting migration of sand dunes using spatial correlation, G. Duffy and John E. Hughes Clarke, (2004)

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Detecting small seabed targets using high frequency multibeam sonar, John E. Hughes Clarke, (1998)

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Determination of Precise Instantaneous Height at Multibeam Transducer, Zhao Jianhu, Zhang Hongmei, and John E. Hughes Clarke, (2007)

Dynamic motion residuals in swath sonar data: Ironing out the creases, John E. Hughes Clarke, (2003)

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Establishing a Seamless Vertical Reference along the Tidal Segment of the Saint John River, J. Zhao, John E. Hughes Clarke, and S. Brucker, (2004)

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Extending the multibeam angular sector to improve seafloor classification, A three-step process to explore the outermost beams of multibeam backscatter, Aluizio Maciel de Oliveira Junior and John E. Hughes Clarke, (2008)

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First wide-angle view of channelized turbidity currents links migrating cyclic steps to flow characteristics, John E. Hughes Clarke, (2016)

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Glacial lineations in Navy Board Inlet, Nunavut, Canada, R. Bennett, B. MacLean, S. Blasco, and John E. Hughes Clarke, (2016)

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Groundtruthing Multibeam Bathymetric Surveys of Finfish Aquaculture Sites in the Bay d’Espoir Estuarine Fjord, Newfoundland, M. F. Tlusty, John E. Hughes Clarke, J. Shaw, V. A. Pepper, and M. R. Anderson, (2000)

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High-Resolution multibeam bathymetry of east and west Flower Garders and Stetson Banks, Gulf of Mexico, J. V. Gardner, L. A. Mayer, John E. Hughes Clarke, and A. Kleiner, (1998)

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High resolution swath sonar investigation of sand ridge, dune and ribbon morphology in the offshore environments of the New Jersey margin, John A. Goff, Donald J. P. Swift, Catherine S. Duncan, Larry A. Mayer, and John E. Hughes Clarke, (1999)

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How Effectively Have You Covered Your Bottom?, J. Miller, John E. Hughes Clarke, and J. Patterson, (1997)

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How to recognize crescentic bedforms formed by supercritical turbidity currents in the geologic record: insights from active submarine channels, Sophie Hage, Matthieu J.B. Cartigny, Michael A. Clare, Esther J. Sumner, Daniela Vendettuoli, John E. Hughes Clarke, Stephen M. Hubbard, Peter J. Talling, D. Gwyn Lintern, Cooper D. Stacey, Rebecca G. Englert, Mark E. Vardy, James E. Hunt, Miwa Yokokawa, Daniel R. Parsons, Jamie L. Hizzett, Maria Azpiroz-Zabala, and Age J. Vellinga, (2018)

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Ice keel seabed features in marine channels of the central Canadian Arctic Archipelago: evidence for former ice streams and iceberg scouring, B. MacLean, S. Blasco, R. Bennett, J. England, W. Rainey, John E. Hughes Clarke, and J. Beaudoin, (2010)

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Imaging Active Mass-Wasting and Sediment Flows on a Fjord Delta, Squamish, British Columbia, John E. Hughes Clarke, Carlos R. Vidiera Marques, and Danar Pratomo, (2014)

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Influence on present-day coastal dynamics and evolution of a relict subaqueous delta lobe: Sol de Riu lobe, Ebro Delta, Caroline Lavoie, Jose A. Jimenez, Miquel Canals, Galderic Lastras, Ben De Mol, David Amblas, Camino Liquete, Marc De Batist, and John E. Hughes Clarke, (2014)

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Integrated seabed mapping of Frobisher Bay, Nunavut, to support infrastructure development, exploration, and natural hazard assessment, D. J. Mate, D. C. Campbell, J. V. Barrie, John E. Hughes Clarke, J. Muggah, T. Bell, and D. L. Forbes, (2015)

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Key future directions for research on turbidity currents and their deposits, Peter J. Talling, Joshua Allin, Dominic A. Armitage, Robert W.C. Arnott, Mattieu J.B. Cartigny, Michael A. Clare, Fabrizio Felletti, Jacob A. Covault, Stephanie Girardclos, Ernst Hansen, Philip R. Hill, Richard N. Hiscott, Andrew J. Hogg, John E. Hughes Clarke, Zane R. Jobe, Giuseppe Malgesini, Alessandro Mozzato, Hajime Naruse, Sam Parkinson, and Frank J. Peel, (2015)

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Large scale current induced erosion and deposition in the wake of the 1929 Grand Banks turbidity current, John E. Hughes Clarke, Alexander N. Shor, David J. W. Piper, and Larry A. Mayer, (1990)

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Late-stage mass-wasting in the wake of the 1929 Grand Banks earthquake, John E. Hughes Clarke, (1990)

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Long-term development and current status of the Barcelona continental shelf: A source-to-sink approach, C. Liquete, M. Canals, G. Lastras, D. Amblas, R. Urgeles, B. De Mol, M. De Batist, and John E. Hughes Clarke, (2007)

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Mapping U.S. Continental Shelves, J. V. Gardner, P. B. Butman, L. A. Mayer, and John E. Hughes Clarke, (1998)

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Mega-scale glacial lineations, Peel Sound, Canadian Arctic Archipelago, B. MacLean, S. Blasco, R. Bennett, John E. Hughes Clarke, and E. Patton, (2016)

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Moat features, Amundsen Gulf, Canadian Arctic Archipelago, B. MacLean, S. Blasco, R. Bennett, and John E. Hughes Clarke, (2016)

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Morphogenetic mesoscale analysis of the northeastern Iberian margin, NW Mediterranean Basin, David Amblas, Miquel Canals, Roger Urgeles, Galderic Lastras, Camino Liquete, John E. Hughes Clarke, Jose L. Casamor, and Antoni M. Calafat, (2006)

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Multibeam Sonar : potential applications for fisheries research, L. Mayer, John E. Hughes Clarke, and S. Dijkstra, (1999)

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Multiple failure styles related to shallow gas and fluid venting, upper slope Canadian Beaufort Sea, northern Canada, Francky Saint-Ange, Pim Kuus, Steve Blasco, David J.W. Piper, John E. Hughes Clarke, and Kevin MacKillop, (2014)

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New marine evidence for a late Wisconsinan ice stream in Amundsen gulf, arctic Canada, B. MacLean, S. Blasco, R. Bennett, T. Lakeman, John E. Hughes Clarke, P. Kuus, and E. Patton, (2015)

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Ocean Mapping, a slantendicular look ahead, Dave Monahan, Dave E. Wells, and John E. Hughes Clarke, (2001)

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Ocean Mapping: From where? to what?, D. E. Wells, L. A. Mayer, and John E. Hughes Clarke, (1991)

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Ocean Surface Feature Detection with the CCRS Along-Track InSAR, J. W. M. Campbell, A. L. Gray, K. E. Mattar, John E. Hughes Clarke, and M. W. A. van der Kooij, (1997)

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On the fly GPS tide measurement along the Saint John River, Jianhu Zhao, John E. Hughes Clarke, Steven Brucker, and Garret Duffy, (2004)

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Pockmarks in Passamaquoddy Bay, New Brunswick, Canada, L. L. Brothers, C. Legere, John E. Hughes Clarke, J. T. Kelley, W. A. Barnhardt, B. D. Andrews, and D. F. Belknap, (2016)

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Preconditioning and triggering of offshore slope failures and turbidity currents revealed by most detailed monitoring yet at a fjord-head delta, Michael A. Clare, John E. Hughes Clarke, Peter J. Talling, Matthieu J.B. Cartigny, and D. G. Pratomo, (2016)

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Reconnaissance seabed mapping around the Hall and Cumberland Peninsulas, Nunavut: Opening up the SE Baffin coastline to geological investigations, John E. Hughes Clarke, J. Muggah, W. Renoud, T. Bell, D. L. Forbes, B. Cowan, and J. Kennedy, (2015)

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Re-examining Rejected Lidar Waveforms, Filling in the Blanks: Seabed Depth, Extinction Depth or Opaque Depth?, P. Kuus and John E. Hughes Clarke, (2009)

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Relationship between continental rise development and palaeo-ice sheet dynamics, Northern Antarctic Peninsula Pacific margin, David Amblas, Roger Urgeles, Miquel Canals, Antoni M. Calafat, Michele Rebesco, Angelo Camerlenghi, Ferran Estrada, Marc De Batist, and John E. Hughes Clarke, (2006)

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Seafloor features delineate Late Wisconsinan ice stream configurations in eastern Parry Channel, Canadian Arctic Archipelago, B. MacLean, S. Blasco, R. Bennett, T. Lakeman, A. J. Pierikowski, M. F.A. Furze, John E. Hughes Clarke, and E. Patton, (2017)

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Seafloor imagery from the BIG’95 debris flow, western Mediterranean, G. Lastras, M. Canals, John E. Hughes Clarke, A. Moreno, M. De Batist, D. G. Masson, and P. Cochonat, (2002)

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Sediment undulations on the Llobregat prodelta: Signs of early slope instability or sedimentary bedforms?, Roger Urgeles, Ben De Mol, Camino Liquete, Miquel Canals, Marc De Batist, John E. Hughes Clarke, David Amblas, Pedro A. Arnau, Antoni M. Calafat, Jose L. Casamor, Victor Centella, Koen De Rycker, Joan Fabres, Jaime Frigola, Sara Lafuerza, Galderic Lastras, Anna Sanchez, Diana Zuniga, Wim Versteeg, and Veronica Willmott, (2007)

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Shallow slides and pockmark swarms in the Eivissa Channel, western Mediterranean Sea, G. Lastras, M. Canals, R. Urgeles, John E. Hughes Clarke, and J. Acosta, (2004)

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Shallow stratigraphic control on pockmark distribution in north temperate estuaries, Laura L. Brothers, Joseph T. Kelley, Daniel F. Belknap, Walter A. Barnhardt, Brian D. Andrews, Christine Legere, and John E. Hughes Clarke, (2012)

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Slope morphology adjacent to the cool‐water carbonate shelf of South Australia: GLORIA and Seabeam imaging, C. C. von der Borch and John E. Hughes Clarke, (1993)

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Sonography of a glaciated continental shelf, B. D. Loncarevic, R. C. Courtney, G. B. J. Fader, P. S. Giles, D. J. W. Piper, G. Costello, John E. Hughes Clarke, and R. R. Stea, (1994)

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Submarine features of modern open-sea fan deltas, Huon Peninsula, Papua New Guinea, Keyu Liu, Keith A. W. Crook, John E. Hughes Clarke, and Greg P. Whitmore, (1995)

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Tectonic Activity and Plate Boundaries along the Northern Flank of the Fiji Platform, John E. Hughes Clarke, P. Jarvis, D. Tiffin, R. Price, and Loren Kroenke, (1993)

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The Impact of Acoustic Imaging Geometry on the Fidelity of Seabed Bathymetric Models, John E. Hughes Clarke, (2018)

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The July 1996 flood deposit in the Saguenay Fjord, Quebec, Canada: Implications for sources of spatial and temporal backscatter variations, Roger Urgeles, Jacques Locat, Thierry Schmitt, and John E. Hughes Clarke, (2002)

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The Western Fiji Transform Fault and its role in the dismemberment of the Fiji Platform, Philip Jarvis, John E. Hughes Clarke, Donald Tiffin, Manabu Tanahashi, and Loren Kroenke, (1994)

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Timing and patterns of basin infilling as documented in Lake Powell during a drought, Lincoln Pratson, John E. Hughes Clarke, Mark Anderson, Thomas Gerber, David Twichell, Ronald Ferrari, Charles Nittrouer, Jonathan Beaudoin, Jesse Granet, and John Crockett, (2008)

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Toward remote seafloor classification using the angular response of acoustic backscattering: a case study from multiple overlapping GLORIA data, John E. Hughes Clarke, (1994)

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Understanding sediment dynamics of two large submarine valleys from seafloor data: Blanes and La Fonera canyons, northwestern Mediterranean Sea, G. Lastras, M. Canals, D. Amblas, C. Lavoie, I. Church, B. De Mol, R. Duran, A. M. Calafat, John E. Hughes Clarke, C. J. Smith, and S. Heussner, (2011)

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Underway Sensor Alignment within Vessel Coordinate Systems, John E. Hughes Clarke, (2004)

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Which Triggers Produce the Most Erosive, Frequent, and Longest Runout Turbidity Currents on Deltas?, Jamie L. Hizzett, John E. Hughes Clarke, Esther J. Sumner, Peter J. Talling, and Michael A. Clare, (2017)

Books

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Information Visualization : Perception for Design, Colin Ware, (2012)

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Information Visualization : Perception for Design, Colin Ware, (2000)

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Information Visualization : Perception for Design, Colin Ware, (2004)

Inland Electronic Navigational Chart Manual, Lee Alexander, (2012)

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La Missione Atalanta e la politica estera dell'Unione Europea, Giuseppe Masetti and Fulvia Orsini, (2010)

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The Electronic Chart : functions, potential, and limitations of a new marine navigation system, Horst Hecht, Bernhard Berking, Gert Buttgenbach, Mathias Jonas, and Lee Alexander, (2002)

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The Electronic Chart : functions, potential, and limitations of a new marine navigation system, Horst Hecht, Bernhard Berking, Gert Buttgenbach, Mathias Jonas, and Lee Alexander, (2006)

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The Electronic Chart. Fundamentals, Functions and other Essentials: A Textbook for ECDIS Use and Training, Horst Hecht, Bernhard Berking, Mathias Jonas, and Lee Alexander, (2011)

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Visual Thinking for Design, Colin Ware, (2008)

Book Chapters

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Erosional and Depositional Features of Glacial Meltwater Discharges on the Eastern Canadian Continental Margin, Davide J.W. Piper, M. E. Deptuck, David C. Mosher, John E. Hughes Clarke, and Sebastien Migeon, (2012)

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Measurement of Bedload Transport in a Coastal Sea Using Serial Multibeam Surveying: Assessing bedload formulae using sand dune migration, Garret P. Duffy and John E. Hughes Clarke, (2012)

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Multibeam Echosounders, John E. Hughes Clarke, (2017)

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Optimal Use of Multibeam Technology in the Study of Shelf Morphodynamics, John E. Hughes Clarke, (2012)

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Present-Day Methods of Depth Measurement, John E. Hughes Clarke, (2000)

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Safety in Travel and Navigation : in From Science to Policy in the Western and Central Canadian Arctic, John E. Hughes Clarke, A. Gaden, Z. Long, T. Pearce, and W. Perrie, (2012)

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Temporal progression and spatial extent of mass wasting events on the Squamish prodelta slope, John E. Hughes Clarke, S. Brucker, J. Muggah, T. Hamilton, D. Cartwright, I. Church, and P. Kuus, (2012)

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The 1929 Grand Banks earthquake, slump and turbidity current, David J. W. Piper, Alexander N. Shor, and John E. Hughes Clarke, (1988)

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Using multibeam sonar surveys for submarine landslide investigations, John E. Hughes Clarke, (1999)

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Visual Thinking with Interactive Diagram, Colin Ware and Anne T. Gilman, (2008)

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Western Nova Scotia Continental Rise: Relative importance of mass wasting and deep-boundary-current activity, John E. Hughes Clarke, D. O'Leary, and D. J. W. Piper, (1991)

Book Sections

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3D Geovisualization and the Structure of Visual Space, Colin Ware and Matthew D. Plumlee, (2005)

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Animation Using Behaviour Functions, Timothy C. Lethbridge and Colin Ware, (1990)

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An Overview of ALS Technology, Robert T. Pack, Valerie Brooks, Jamie Young, Nuno Vilaça, Svein Vatslid, Peter Rindle, Sven Kurz, Christopher E. Parrish, Rex Craig, and Philip W. Smith, (2012)

Applications, H K. Heidemann, J. Stoker, D Brown, M J. Olsen, R Singh, K Williams, A Chin, A Karlin, G McClung, J Janke, J Shan, K H. Kim, A Sampath, S Ural, Christopher E. Parrish, K Waters, Jennifer Wozencraft, Christopher L. Macon, John Brock, Wayne C. Wright, C Hopkinson, A Pietroniro, I Madin, and J. Conner, (2012)

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Arctic Marine Research: A U.S. Practitioner’s Perspective, Larry A. Mayer, (2012)

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ArcView Objects in the Fledermaus Interactive 3-D Visualization System: An Example from the STRATAFORM GIS, Luciano E. Fonseca, Larry A. Mayer, and Mark Paton, (2002)

Assessing Impact from Wind Farms at Subtidal, Exposed Marine Areas, Thomas Dahlgren, Marie-Lise Schläppy, A Shashkov, M Andersson, Yuri Rzhanov, I Fer, and E Heggøy, (2013)

A U.S. Practitioner's Perspective, Larry A. Mayer, (2012)

Australia: A Cenozoic Continental Margin Dominated by Mass Transport, R Boyd, J Keene, T Hubble, James V. Gardner, K Glenn, K Ruming, and N Exon, (2010)

Bathymetry and Physiography of the Arctic Ocean and Its Constituent Seas, Martin Jakobsson, Arthur Grantz, Yngue Kristoffersen, and M Macnab, (2003)

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Calculation of in situ acoustic wave properties in marine sediments, Barbara J. Kraft, Larry A. Mayer, P. Simpkin, P. Lavoie, E. Jabs, E. Lynskey, and John A. Goff, (2002)

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Challenges of collecting Law of the Sea data in the Arctic, Larry A. Mayer, Martin Jakobsson, and John K. Hall, (2005)

Chapter 14 - Electronic Charts, Lee Alexander, (2002)

Characteristics of Several Tsunamigenic Submarine Landslides, H J. Lee, R E. Kayen, James V. Gardner, and J Locat, (2003)

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Deepwater Horizon and the Arctic: Is there a Need for International Regulation?, Larry A. Mayer, J. Ashley Roach, and Betsy Baker, (2012)